\name{ChIPQCsample-class}
\Rdversion{1.1}
\docType{class}
\alias{ChIPQCsample-class}
\alias{averagepeaksignal,ChIPQCsample-method}
\alias{coveragehistogram,ChIPQCsample-method}
\alias{crosscoverage,ChIPQCsample-method}
\alias{flagtagcounts,ChIPQCsample-method}
\alias{Normalisedaveragepeaksignal,ChIPQCsample-method}
\alias{peaks,ChIPQCsample-method}
\alias{show,ChIPQCsample-method}
\alias{ssd,ChIPQCsample-method}

\title{Class \code{"ChIPQCsample"}}
\description{
%%  ~~ A concise (1-5 lines) description of what the class is. ~~
}
\section{Objects from the Class}{
Objects can be created by calls of the form \code{new("ChIPQCsample", ...)}.
%%  ~~ describe objects here ~~ 
}
\section{Slots}{
  \describe{
    \item{\code{AveragePeakSignal}:}{Object of class \code{"list"} ~~ }
    \item{\code{CrossCoverage}:}{Object of class \code{"numeric"} ~~ }
    \item{\code{SSD}:}{Object of class \code{"numeric"} ~~ }
    \item{\code{CoverageHistogram}:}{Object of class \code{"numeric"} ~~ }
    \item{\code{FlagAndTagCounts}:}{Object of class \code{"numeric"} ~~ }
    \item{\code{seqnames}:}{Object of class \code{"Rle"} ~~ }
    \item{\code{ranges}:}{Object of class \code{"IRanges"} ~~ }
    \item{\code{strand}:}{Object of class \code{"Rle"} ~~ }
    \item{\code{elementMetadata}:}{Object of class \code{"DataFrame"} ~~ }
    \item{\code{seqinfo}:}{Object of class \code{"Seqinfo"} ~~ }
    \item{\code{metadata}:}{Object of class \code{"list"} ~~ }
  }
}
\section{Extends}{
Class \code{"\linkS4class{GRanges}"}, directly.
Class \code{"\linkS4class{GenomicRanges}"}, by class "GRanges", distance 2.
Class \code{"\linkS4class{Vector}"}, by class "GRanges", distance 3.
Class \code{"\linkS4class{GenomicRangesORmissing}"}, by class "GRanges", distance 3.
Class \code{"\linkS4class{GenomicRangesORGRangesList}"}, by class "GRanges", distance 3.
Class \code{"\linkS4class{Annotated}"}, by class "GRanges", distance 4.
}
\section{Methods}{
  \describe{
    \item{averagepeaksignal}{\code{signature(object = "ChIPQCsample")}: ... }
    \item{coveragehistogram}{\code{signature(object = "ChIPQCsample")}: ... }
    \item{crosscoverage}{\code{signature(object = "ChIPQCsample")}: ... }
    \item{flagtagcounts}{\code{signature(object = "ChIPQCsample")}: ... }
    \item{Normalisedaveragepeaksignal}{\code{signature(object = "ChIPQCsample")}: ... }
    \item{peaks}{\code{signature(object = "ChIPQCsample")}: ... }
    \item{show}{\code{signature(object = "ChIPQCsample")}: ... }
    \item{ssd}{\code{signature(object = "ChIPQCsample")}: ... }
	 }
}
\references{
%%  ~~put references to the literature/web site here~~
}
\author{
%%  ~~who you are~~
}
\note{
%%  ~~further notes~~
}

%% ~Make other sections like Warning with \section{Warning }{....} ~

\seealso{
%%  ~~objects to See Also as \code{\link{~~fun~~}}, ~~~
%%  ~~or \code{\linkS4class{CLASSNAME}} for links to other classes ~~~
}
\examples{
showClass("ChIPQCsample")
}
\keyword{classes}
